Publications

Selected recent work

2026

  • Razo-Mejia, M., Mani, M. & Petrov, D. Learning the Shape of Evolutionary Landscapes: Geometric Deep Learning Reveals Hidden Structure in Phenotype-to-Fitness Maps. PRX Life 4, 013030 (2026). Paper paper website | github repository

Peer-reviewed Publications

2024

2021

  • Morrison, M. J., Razo-Mejia, M. & Phillips, R. Reconciling kinetic and thermodynamic models of bacterial transcription. PLoS Comp. Bio. (2021). Paper | github repository

2020

2019

  • Chure, G., Razo-Mejia, M., et al. Predictive shifts in free energy couple mutations to their phenotypic consequences. PNAS 201907869 (2019) doi:10.1073/pnas.1907869116. Paper | paper website | github repository

  • Phillips, R. Belliveau, N., Chure, G., Garcia, H., Razo-Mejia, M., & Scholes, Clarissa. Figure 1 Theory Meets Figure 2 Experiments in the Study of Gene Expression. Annu. Rev. Biophys. 48, 121–163 (2019). link

  • Foster, P. J., Razo-Mejia, M. & Phillips, R. Measuring the Energetic Costs of Embryonic Development. Dev. Cell 48, 591–592 (2019). link

2018

2015

  • Zelcbuch, L., Razo-Mejia, M., et al. An In Vivo Metabolic Approach for Deciphering the Product Specificity of Glycerate Kinase Proves that Both E. coli’s Glycerate Kinases Generate 2-Phosphoglycerate. PLoS One 10, e0122957 (2015). Paper

2014

  • Razo-Mejia, M. et al. Comparison of the theoretical and real-world evolutionary potential of a genetic circuit. Phys. Biol. 11, 026005 (2014). link